YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMM19_XENTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFIQDDVYK EYVKMMMNIV ILCMILCISL SFWIISITAS TYSGSLRPIS PWRWLVSVLT  60
   61 PIIIVWHGIK KRSLDNSGAL GGLLVGFILT IANYSFFSAL LTFFFISSKL TKWKGEVKKC 120
  121 YDSEYKEGGQ RNWVQVFCNG GLPAELALLY MIENGPGEIP IDFSKEYTAS WMCLSLLGAL 180
  181 ASSAGDTWAS EIGPVLSKSS PRLITTWEKV PVGTNGGVTP VGLISSLLGG TSVGVAYFVT 240
  241 QLIFVPDLEI AAPQWPIVIY GGMAGLLGSL IDSYLGAIMQ YSGYDESTGK IVNHPTKEAK 300
  301 FICGKPILDN NAVNLFSSIL IALLLPTAAW SFWPRL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.63
Transmembrane Helix	17	39	0.89
Non-Cytoplasmic	40	49	0.55
Transmembrane Helix	50	69	0.89
Cytoplasmic	70	78	0.54
Transmembrane Helix	79	105	0.82
Non-Cytoplasmic	106	132	0.60
Transmembrane Helix	133	152	0.36
Cytoplasmic	153	166	0.67
Transmembrane Helix	167	189	0.71
Non-Cytoplasmic	190	220	0.78
Transmembrane Helix	221	245	0.83
Cytoplasmic	246	255	0.71
Transmembrane Helix	256	278	0.86
Non-Cytoplasmic	279	311	0.81
Transmembrane Helix	312	333	0.90
Cytoplasmic	334	336	0.71