YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77965444, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVVKPGRRV RVASVAAAAA AMAASLACTP AGAADMNAVN NAGAIASSVM VGSAAPSLGI  60
   61 GAVLQTLVGL AVVIGLVFAC AWLARRFGFQ HARRGGPLKV VSSVAVGAKE SATIVEIGDT 120
  121 WLVLGVAPGN VRLLHTLPAG SAAAPVSADS PAGAAPSDGG LPGTFGSRFR DALAGEAAKR 180
  181 LGRGKDR

Type	Start	End	Confidence
Signal Peptide	1	33	0.76
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	61	0.90
Transmembrane Helix	62	84	0.91
Cytoplasmic	85	187	0.93