YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043489, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVNTIGQY IPGNSFIHRL DPRTKFFSLL VAVFLVFFLD NLLFLGFLLF GVILVTFLAG  60
   61 IKPKMFWQAL KPVVFILVLA LILQLFFTPG EKLITLGPLK ITREGLVNSG IVFLRLVVML 120
  121 LSAYLLTATT SPTELTNGLE SLLKPFGRFG LPYGEIALML TIALRFIPTL TAEAERLIKA 180
  181 QESRGADFNT RGFSNKAKMM LPLIIPLFIN AFKRADELAV AMEARGYRIG APRGKLKPLK 240
  241 FAAKDYLFLF LNFLLTVLFV ILKLWGGFPA KF

Type	Start	End	Confidence
Cytoplasmic	1	25	0.98
Transmembrane Helix	26	59	0.82
Non-Cytoplasmic	60	68	0.81
Transmembrane Helix	69	88	0.93
Cytoplasmic	89	105	0.88
Transmembrane Helix	106	128	0.88
Non-Cytoplasmic	129	148	0.90
Transmembrane Helix	149	169	0.89
Cytoplasmic	170	245	0.94
Transmembrane Helix	246	266	0.94
Non-Cytoplasmic	267	272	0.83