YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78043643, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFQLSEEQQ MFVDMVRKFA QREIAPIAEK TDREHRFPKE TLDKLAELGL MGIPISEEYG  60
   61 GAGADYFSYI LFIEEIAKVC ASTAVILAVH IGLGCMSIYM FGTEEQKQKY LVPMAQGRML 120
  121 GAYALTEPNS GSDAASLRLS AVDKGDHFVL NGSKIFITNG SYADVFITFA RTDPATKGAE 180
  181 GITCLIVEKN TPGLTISKPV EKMGLNGSVT CELYFENAIV PKENVLGKIG EGFKVAMQLL 240
  241 DGGRIAIGAQ GLGIAEGAFE YTLNYIKQRE QFGRPIAANQ GIQWMVADMA TEIEAAKLLV 300
  301 YRAAWLKNNG LPHSKEAAMA KKYATDTAMR VTTDCVQLLG GYGYTKEYPV ERYMRDAKIT 360
  361 QIYEGTNQIQ RIVIARHLLK

Type	Start	End	Confidence
Cytoplasmic	1	78	0.60
Transmembrane Helix	79	101	0.58
Non-Cytoplasmic	102	380	0.97