YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77996010, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.95
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	350	0.99
Transmembrane Helix	351	368	0.95
Cytoplasmic	369	375	0.69
Transmembrane Helix	376	393	0.94
Non-Cytoplasmic	394	400	0.64
Transmembrane Helix	401	420	0.91
Cytoplasmic	421	428	0.85
Transmembrane Helix	429	451	0.92
Non-Cytoplasmic	452	465	0.87
Transmembrane Helix	466	487	0.90
Cytoplasmic	488	505	0.92
Transmembrane Helix	506	524	0.94
Non-Cytoplasmic	525	554	0.87
Transmembrane Helix	555	571	0.69
Cytoplasmic	572	578	0.67
Transmembrane Helix	579	598	0.93
Non-Cytoplasmic	599	612	0.63
Transmembrane Helix	613	632	0.91
Cytoplasmic	633	650	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKGKILLAI LLLVIFAFSI ILLPPRIAED KKKETGFYLD YETLINLSSY WGLTPEQTIA  60
   61 RLKKTGFVGL ALYEENGSSQ EIFNQEAGLF LGVSAVATFP EFKDFIELKA PYTYLITDNK 120
  121 EIVDSAIHAL SARNIKNQLQ QVNKKYILKI NYPYKSTEKL LLGFNPQGLE MARKNNLDVL 180
  181 LFIPQWSIAN EQEVKNYLSY IKTFCPEPKV VFADKNLPEN NKFTKIFADT FLKENFSVGL 240
  241 LDGIDQPQTN AMINRTKLPV FRVRQVTINT IEGGNILATT EEKIESLKIG IRERRNKAIV 300
  301 FKIPAKEFNK TTVLAFETVT SQTYETMKSL NYQFVPVNPL KKIPERKLEK LLLSVLLIVL 360
  361 FGYSLVLFDL VNIKTALTFT VILLIGGFAL FTLNFDLYFK FCAFGASVLY PLIALFSIDI 420
  421 KNPNSFLKAL ASLVIVVLIS VFGGFAISAF LTGNNYFVHA DLFRGVKLSF LLPVLIFAIY 480
  481 AARVLLVREK SLKQVVFEYL GLELKLWQLF ALIIVFGAGA YYLLRTGNAA ESLVLPGEIK 540
  541 LRALLNKYLY VRPRFKEFAI GYPLLLWGLW TKVRPEIRYI ALVIGSLAPV TVINTFAHQY 600
  601 DPLWVSLIRT GNGLLLGSIL GIFLIAINMV MVKAFLKGSQ GEINGGNKNL