YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044109, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.68
Transmembrane Helix	20	41	0.93
Non-Cytoplasmic	42	80	0.50
Transmembrane Helix	81	105	0.90
Cytoplasmic	106	135	0.65
Transmembrane Helix	136	157	0.83
Non-Cytoplasmic	158	196	0.65
Transmembrane Helix	197	218	0.91
Cytoplasmic	219	234	0.81
Transmembrane Helix	235	254	0.95
Non-Cytoplasmic	255	261	0.83
Transmembrane Helix	262	280	0.54
Cytoplasmic	281	290	0.44
Transmembrane Helix	291	310	0.69
Non-Cytoplasmic	311	316	0.56
Transmembrane Helix	317	337	0.82
Cytoplasmic	338	352	0.86
Transmembrane Helix	353	376	0.89
Non-Cytoplasmic	377	408	0.54
Transmembrane Helix	409	433	0.84
Cytoplasmic	434	451	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAINTKKEIN FFRRLTPSQI LVLGFAGVIL LGTVLLMLPI STKDGTVTPF LDALFTATSA  60
   61 VCVTGLVVVD TGTYWSLFGQ IVILLLIQVG GLGFMTIATL FAILLGRRIN LRERIVIQEA 120
  121 LNQASLEGII KLTKQVILFT FSFEGVFAVI LGLRFSLDYG FIKGMWFGVF HAVSAFNNAG 180
  181 FDLIGNFKSL TPYVGDVIVN LSIAILIIAG GIGFYVISEL FNLRKKGRLS LHSKITLMTT 240
  241 GLLLLVGTLV IFVMEYNNDK TLGALPFGEK ILAAFFQAVT PRTAGFNTVD IAALHPATQY 300
  301 FIIILMFIGA SPGSTGGGVK TTTFAVLTLA VINIILGRDE ILVYNRRLPR EQIFKAIAIV 360
  361 MISLSLINIV TFILTFTEGH NILMNMFETV SAFGTVGLSM GLTPKLSELG RILIILMMFF 420
  421 GRVGPLTITY ALAQRRKKAL FTLPEEKVMV G