YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78044334, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDKKVSWAK LSIISNTLLV LFKIVVGLFT GSVSIIAEGL HSGVDLLASI ITFFSVKVAS  60
   61 RPADVRHPYG HGKVENIAGT IEGLLIFLGA VLIIKEALPK FWHPEMPESL GWGMGVMAVS 120
  121 ALVNFFISQT LLKIAKETDS PALEADGWHL RTDVYTSAGV LLGLLLIKLT GITYFDPILA 180
  181 LIVAGMILKA AYEITFEGFA NMVDTALPEK EIALIKDSIA NYGEKFLEFH KLRARKSGSE 240
  241 RFIDLHLVVP EKLSVKEVHD LCNKIEREIE EKLPNSHVLI HAEPCQKEQR QCENCPYCSE 300
  301 KKS

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	37	0.79
Non-Cytoplasmic	38	40	0.55
Transmembrane Helix	41	60	0.69
Cytoplasmic	61	76	0.67
Transmembrane Helix	77	98	0.84
Non-Cytoplasmic	99	109	0.73
Transmembrane Helix	110	132	0.87
Cytoplasmic	133	151	0.71
Transmembrane Helix	152	172	0.65
Non-Cytoplasmic	173	173	0.42
Transmembrane Helix	174	192	0.63
Cytoplasmic	193	303	0.73