YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SC5A8_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.95
Transmembrane Helix	13	35	0.89
Cytoplasmic	36	52	0.93
Transmembrane Helix	53	75	0.89
Non-Cytoplasmic	76	86	0.81
Transmembrane Helix	87	109	0.90
Cytoplasmic	110	129	0.89
Transmembrane Helix	130	153	0.88
Non-Cytoplasmic	154	162	0.75
Transmembrane Helix	163	183	0.91
Cytoplasmic	184	190	0.75
Transmembrane Helix	191	211	0.89
Non-Cytoplasmic	212	240	0.90
Transmembrane Helix	241	260	0.95
Cytoplasmic	261	280	0.89
Transmembrane Helix	281	302	0.91
Non-Cytoplasmic	303	342	0.91
Transmembrane Helix	343	363	0.92
Cytoplasmic	364	381	0.92
Transmembrane Helix	382	404	0.92
Non-Cytoplasmic	405	410	0.78
Transmembrane Helix	411	432	0.91
Cytoplasmic	433	440	0.75
Transmembrane Helix	441	463	0.87
Non-Cytoplasmic	464	519	0.97
Transmembrane Helix	520	542	0.91
Cytoplasmic	543	610	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGSGGPVAT FSVWDYVVFA GLILVAAGIG LFQSFRGRKE ASSDEFLLGG RQMTAVPVAL  60
   61 SLTASFMSGI TVIGTPAEAY LYGTPFWLFF ISYAIMSTIS AEIFVPLFYR LNITSTYEYL 120
  121 EMRYNKLIRV IGTSMYIIQT ALYTGMVIFA PALALNQITG LDLWGVLVAT GAVCIIYCTL 180
  181 GGLKAVIWTD VFQMIIMLGG FVAVIARGAV LQGGLGRVWN DSFYGGRLET FSFDPDPLRR 240
  241 HSFWTIVVGG SLMWASMYSI NQSQVQRYIS CRTMTHAKLS LYVNMVGLWV TVSLAMMSGL 300
  301 TMYSIYKDCD PFTNKDVGAT DQLLPYLVMD ILADFPGLPG LFVAAAYSGT LSTVSSSINA 360
  361 LVAVTVEDFM KPAWPSLTER QLSWINMGMS VFYGAVCIGM AGVASMMGNI LQAALSIFGM 420
  421 ISGPLLGLYM LGMFFRCANS TGGLAGLASG LAITLWVGIG AQLYPPLPEK TLRLPLSVEG 480
  481 CVALNTSETT TMTPFSTVLQ TTTPQPRPAL ADNWYSLSYL YFSPVGIVVT MIIALIVSAI 540
  541 SGGCKQKKVR PELFISKSDL ICFRCKKSDS EVSDLIETKP KDNQGLDSPV FYDNEIVLKE 600
  601 KDQQEKITKL