YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78172117, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYGFVIDAR KCMGCHGCTV ACKSEHQVPL GVNRTWVKYV EKGMFPESRR YFTVLRCNHC  60
   61 AEPPCVDICP VEALHKREDG IVDFDKRRCI GCKACAQACP YGALYIDPET HTSAKCNYCA 120
  121 HRKEVGMKPA CVVICPQQAI VSGDFDDPNS AVSILLAKNQ TAVRKPEKGT SPKLFYINGD 180
  181 GASLDPLEVS AVNGYLWSEQ LRGVGHFAGK SYEKPAKATV PQSGKHGRPK ARKVYDVPSK 240
  241 GVVWGWEVPA YVWSKAVSSG LFLVLVMMQL FVASLLSESM QWASWAASLF FLALTGGFLV 300
  301 KDLDRPERFS FVMLRPQFDS WLVKGGLTIT GFGAFLALWG AGSFLQLPLL TSIAQVGGTL 360
  361 FAVITAIYTA FLFGSAKGRD FWQSPMLLLH MLLNSLLAGG SAMLLLGVVT ASSNDLFSLL 420
  421 QPSLAAGFAF HLIIMALELF GKHPSASAER AAETILHGEL KHPFWIGSVL IGNLMPFVLC 480
  481 LVAPSSFGLT IAALMALCGV FYTEKVWVRA PQTVPLS

Type	Start	End	Confidence
Cytoplasmic	1	250	0.98
Transmembrane Helix	251	273	0.87
Non-Cytoplasmic	274	281	0.77
Transmembrane Helix	282	300	0.97
Cytoplasmic	301	320	0.93
Transmembrane Helix	321	342	0.94
Non-Cytoplasmic	343	352	0.76
Transmembrane Helix	353	374	0.91
Cytoplasmic	375	386	0.90
Transmembrane Helix	387	411	0.87
Non-Cytoplasmic	412	418	0.87
Transmembrane Helix	419	441	0.88
Cytoplasmic	442	461	0.93
Transmembrane Helix	462	483	0.84
Non-Cytoplasmic	484	486	0.62
Transmembrane Helix	487	508	0.75
Cytoplasmic	509	517	0.76