YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARV1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTGGQNGLR PGKGNTEGVK EGKGKTDEVT MTSNTDASAS CQYRCIECNQ EAKELYRDYN  60
   61 HGVLKITICK SCQKPVDKYI EYDPVIILIN AILCKAQAYR HILFNTKINM HGKLCVFCLL 120
  121 CEAYLRWWQL QDSSQSIDPD DFIRYAKEWD FYRMFAIASL EQTAYFIGIF AFLWVERPIR 180
  181 AKEKLNFTLL LKALLLSSYG KLLLIPAVIW EHDYTPLCLR LIKVFVLTSN FQAIRVTLNI 240
  241 NRKLAFLAIL SGLLVESTMV YFFQRMEWAV GSDCAIYKSQ DF

Type	Start	End	Confidence
Cytoplasmic	1	109	0.90
Transmembrane Helix	110	128	0.78
Non-Cytoplasmic	129	153	0.86
Transmembrane Helix	154	175	0.87
Cytoplasmic	176	187	0.86
Transmembrane Helix	188	209	0.70
Non-Cytoplasmic	210	216	0.65
Transmembrane Helix	217	234	0.45
Cytoplasmic	235	243	0.56
Transmembrane Helix	244	263	0.88
Non-Cytoplasmic	264	282	0.66