YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|79324347
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.99
Transmembrane Helix	52	73	0.90
Non-Cytoplasmic	74	93	0.91
Transmembrane Helix	94	116	0.89
Cytoplasmic	117	183	0.98
Transmembrane Helix	184	207	0.89
Non-Cytoplasmic	208	221	0.80
Transmembrane Helix	222	242	0.92
Cytoplasmic	243	249	0.84
Transmembrane Helix	250	271	0.91
Non-Cytoplasmic	272	300	0.79
Transmembrane Helix	301	321	0.83
Cytoplasmic	322	328	0.59
Transmembrane Helix	329	352	0.84
Non-Cytoplasmic	353	371	0.76
Transmembrane Helix	372	398	0.79
Cytoplasmic	399	422	0.77
Transmembrane Helix	423	443	0.87
Non-Cytoplasmic	444	451	0.81
Transmembrane Helix	452	473	0.92
Cytoplasmic	474	479	0.75
Transmembrane Helix	480	501	0.92
Non-Cytoplasmic	502	508	0.81
Transmembrane Helix	509	528	0.95
Cytoplasmic	529	541	0.84
Transmembrane Helix	542	564	0.84
Non-Cytoplasmic	565	578	0.76
Transmembrane Helix	579	601	0.66
Cytoplasmic	602	793	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARVEAATM GGEIDEEESD ERGSMWDLDQ KLDQSMDEEA GRLRNMYREK KFSALLLLQL  60
   61 SFQSLGVVYG DLGTSPLYVF YNTFPHGIKD PEDIIGALSL IIYSLTLIPL LKYVFVVCKA 120
  121 NDNGQGSGTF ALYSLLCRHA KVKTIQNQHR TDEELTTYSR TTFHEHSFAA KTKRWLEKRT 180
  181 SRKTALLILV LVGTCMVIGD GILTPAISVL SAAGGLRVNL PHISNGVVVF VAVVILVSLF 240
  241 SVQHYGTDRV GWLFAPIVFL WFLSIASIGM YNIWKHDTSV LKAFSPVYIY RYFKRGGRDR 300
  301 WTSLGGIMLS ITGIEALFAD LSHFPVSAVQ IAFTVIVFPC LLLAYSGQAA YIRRYPDHVA 360
  361 DAFYRSIPGS VYWPMFIIAT AAAIVASQAT ISATFSLVKQ ALAHGCFPRV KVVHTSRKFL 420
  421 GQIYVPDINW ILMILCIAVT AGFKNQSQIG NAYGTAVVIV MLVTTLLMTL IMILVWRCHW 480
  481 VLVLIFTVLS LVVECTYFSA MLFKIDQGGW VPLVIAAAFL LIMWVWHYGT LKRYEFEMHC 540
  541 RVSMAWILGL GPSLGLVRVP GVGLVYTELA SGVPHIFSHF ITNLPAIHSV VVFVCVKNLP 600
  601 VYTVPEEERF LVKRIGPKNF HMFRCVARYG YRDLHKKDDD FEKRLFESLF LYVRLESMME 660
  661 GGCSDSDDYS ICGSQQQLKD TLGNGNENEN LATFDTFDSI ESITPVKRVS NTVTASSQMS 720
  721 GVDELEFING CRDAGVVHIM GNTVVRARRE ARFYKKIAID YVYAFLRKIC REHSVIYNVP 780
  781 QESLLNVGQI FYV