YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57233625, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPVSSKKTT SDKQMPVSKK LKLGILFSGI ILLAEFIGAL VSNSLALLSD AGHVLTDVLA  60
   61 LSLSYFALMQ AKRPSNFKMT FGYHRIGVLV AILNSISLIG IAVFIFYESF QRFQNPPEIN 120
  121 AGLVLPVALL GLATNLTVAL ILHREQKENL NIKSAFWHAA GDALASVGVI ISAVVIIISG 180
  181 NYLADIVVSI IIGLIISLGG VNIFRQGLRV ILEASPKDIN LNQLADSVKT IPGVKDFHHI 240
  241 HIWSISPEIH ALSAHVLIDD CPVSQADDIR QHIETILKES FALSHVTLQM ECQVCRTNDI 300
  301 LCQLEIEQKP HLHKHH

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	50	0.70
Transmembrane Helix	51	69	0.94
Cytoplasmic	70	85	0.82
Transmembrane Helix	86	106	0.94
Non-Cytoplasmic	107	120	0.89
Transmembrane Helix	121	142	0.93
Cytoplasmic	143	154	0.92
Transmembrane Helix	155	178	0.91
Non-Cytoplasmic	179	185	0.69
Transmembrane Helix	186	204	0.96
Cytoplasmic	205	316	0.99