YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65322195
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.97
Transmembrane Helix	33	55	0.86
Cytoplasmic	56	81	0.93
Transmembrane Helix	82	107	0.84
Non-Cytoplasmic	108	127	0.90
Transmembrane Helix	128	153	0.82
Cytoplasmic	154	172	0.95
Transmembrane Helix	173	193	0.94
Non-Cytoplasmic	194	206	0.80
Transmembrane Helix	207	230	0.92
Cytoplasmic	231	263	0.96
Transmembrane Helix	264	286	0.91
Non-Cytoplasmic	287	504	0.98
Transmembrane Helix	505	528	0.91
Cytoplasmic	529	561	0.95
Transmembrane Helix	562	580	0.96
Non-Cytoplasmic	581	591	0.77
Transmembrane Helix	592	614	0.91
Cytoplasmic	615	625	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFSIVIYFT FKALQYNSQM EKAAEASKKI SGAFQVSSVM LIIFVAVFII YSNGFFTRKR  60
   61 KKEVGLYSLL GIRKRQIGKM LFYENMLMGL MSLIIGIAIG SVLSKLFLEL LVSMMGLKLN 120
  121 VHFEVPMAAI VDTAIIFFVI ILYTSLQGYR LIYRFKLIEL FRAEREGEAM PKGSVIMALI 180
  181 SVFLIGSGYF LALMYMKAVM YADFMVVALY ILLATVAGTY LLFMFFTVFI LKRARNNKSA 240
  241 FYNGMNMVTT SQLLYRIKGN AKSLATIAIL SAVTLTAVGT SVTMYYNTFT QSKVAAPYSY 300
  301 SYEKKDEALD KKVNEILAGE KNNHPVTYES EFEMIPVKGT FKGERADQVL NTHYNVTKQY 360
  361 QLISQSNFNT IAKHLDIEPV NLSANEAFVY DSLYIETLDF GPLYTGNTAV FPVGNESKEL 420
  421 KIKGVNSRSV TNLNELFVIV PDQTYEQAKQ VNETRIVKNI DVKGERNSKE LTAKLASVMP 480
  481 AGESEILKPF HDFYTGFQTG LETTGLMMFI GLFLGLVFLL ATGSIIYFKQ LTEASADRDR 540
  541 YVVLHKVGVT KQEMKKAIAK QVSFIFAIPL VIGILHSLFA LKGLGNILPY EIMIPLLISI 600
  601 GVYGVIYIGY YFLTVRSYYK IVSAK