YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70983484, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.99
Transmembrane Helix	39	59	0.93
Non-Cytoplasmic	60	71	0.80
Transmembrane Helix	72	95	0.88
Cytoplasmic	96	108	0.92
Transmembrane Helix	109	130	0.91
Non-Cytoplasmic	131	144	0.79
Transmembrane Helix	145	165	0.92
Cytoplasmic	166	175	0.82
Transmembrane Helix	176	197	0.90
Non-Cytoplasmic	198	204	0.89
Transmembrane Helix	205	228	0.89
Cytoplasmic	229	246	0.87
Transmembrane Helix	247	266	0.94
Non-Cytoplasmic	267	288	0.91
Transmembrane Helix	289	314	0.86
Cytoplasmic	315	322	0.85
Transmembrane Helix	323	343	0.93
Non-Cytoplasmic	344	350	0.75
Transmembrane Helix	351	374	0.89
Cytoplasmic	375	393	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNDHDHVPP TSSQSDSGFF EQEMKKSPRL SLRERLRHFT WAWYTLTMST GGLALLIASQ  60
   61 PYTFNGMKGI GMVVYILNLL LFALVCSLMV LRFVLHGGFL DSLRHPREGL FFPTFWLSIA 120
  121 TIITGLHRYF GSDDLESYLI ALEVLFWVYC SCTLATAVIQ YSFLFAAHSY GLQTMMPSWI 180
  181 LPAFPIMLSG TIASVISESQ PARSAIPIIT AGVTFQGLGF SISFIMYAHY IGRLMQSGLP 240
  241 CREHRPAMFI CVGPPSFTAL ALVGMAKGLP DEFKIIKDAH VEDARILELM AIIVGVFLWA 300
  301 LSLWFFFIAF VAVVRCRPTA FHLSWWAMVF PNTGFTLATI TLGRALGSPG VLGVGSAMSV 360
  361 GVVCMWVFVF VYHIRAVIRQ DIMYPGKDED VLD