YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70986446, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSTMADVS GAQKSPAVAL PEYTLKEVAL HNRKDDNWIV IHGQVYDVTK YQKDHPGGAD  60
   61 VLAEVAGSDA TEAFEDIGHS EDSREILEEF LIGTLQGAKE YVAPKKVRII AQSPVETPAS 120
  121 SSATRYVGAV TSLLGAVASL IYVYRRGSLY ALDTTGSLHR YLSQPLRGVR LPQGGFANGF 180
  181 LAATLICAAA GGVIARKAAK LTKIESGFLQ YPPHIKARKV PRADPHLLKG FLDSKEFQRL 240
  241 PLIQKDQLSS NVYRFVFGLP DSNGVIGLPI GQHVAIRAVI DGVTVSRSYT PVSNNLDRGR 300
  301 LELVVKCYPD GVLSGKYLAN LQVGDEVEFR GPKGAMRYKP GFCKKMGMVA GGTGITPMYQ 360
  361 LIRAICEDER DTTEISLIYA NRTEADILLR DELEQFARKY PKNFKLWYML DTAPENWAYG 420
  421 SGFVNQEVLS ERLFAPSPDT KVLLCGPPGM VSATKKMLAA IGFQKPGPVS KMTDQIFCF

Type	Start	End	Confidence
Cytoplasmic	1	122	0.81
Transmembrane Helix	123	144	0.74
Non-Cytoplasmic	145	174	0.85
Transmembrane Helix	175	195	0.86
Cytoplasmic	196	479	0.76