YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66846710, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.99
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	111	0.74
Transmembrane Helix	112	136	0.86
Cytoplasmic	137	157	0.70
Transmembrane Helix	158	180	0.76
Non-Cytoplasmic	181	190	0.79
Transmembrane Helix	191	209	0.96
Cytoplasmic	210	218	0.82
Transmembrane Helix	219	241	0.88
Non-Cytoplasmic	242	261	0.91
Transmembrane Helix	262	285	0.87
Cytoplasmic	286	303	0.89
Transmembrane Helix	304	325	0.93
Non-Cytoplasmic	326	360	0.91
Transmembrane Helix	361	383	0.83
Cytoplasmic	384	403	0.94
Transmembrane Helix	404	423	0.95
Non-Cytoplasmic	424	430	0.83
Transmembrane Helix	431	453	0.92
Cytoplasmic	454	474	0.91
Transmembrane Helix	475	497	0.90
Non-Cytoplasmic	498	515	0.88
Transmembrane Helix	516	537	0.91
Cytoplasmic	538	583	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKDSIEPKA EPMVSDPPPI YGETETTKGS MGQRIWDSFK RDPNAHVTAH ASGSNGGTFD  60
   61 LEQAAQKTAS SPLQRSLKNR HLQMIAIGGS IGTGLFVGSG NVLSTGGPAS VLIAYALIGC 120
  121 MLFCTVHALG EMAVLFPVAG SFAHYSTRFI DPAWGFAMGW NYALQWLIVL PLEIVAASIT 180
  181 VDYWESNISN AAWVAIFWAV IVSINLFGVK GYGEAEFVFS LIKVIAVIGF IILGIILNCG 240
  241 GGPKGGYIGG KYWHSPGAFN NGFKGLCSVF VNAAFAFAGT ELVGLAAAET ANPRKSLPTA 300
  301 VKQVFWRICL FYIVSLTLVG LLVPFDDKRL LGESSADAKA SPFVIAIKNA GISGLDSVMN 360
  361 VVIMIAVLSV GNSSVYGSSR TLAALAEQRQ APQFLAYIDR KGRPLFAILV ASALGLLGFL 420
  421 AASSKQGEAF MWMMAISGLS SIFTWGSVCF AHIRFRKAWK VQGHSLNELA FQSQAGLVGS 480
  481 WIGFIFNCLV LVAQFWVGFA PIGYSEMTSG ELVESWFSVY LAAPVVLVFY FGYKFYYKTS 540
  541 FLRAKDMDLH TGRRELDIQH LIEEERAEQA AWPVWKKVYK IFC