YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70990744, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKSSSPQS NSTRKNSCGC CCFSVRKFGF LAVFVAIFAA LYSYLDARLE QFYIFNPEHL  60
   61 HDLSQRAIQA HGNDTRAMVD FIVAELDQKI PGNHLNKNEE WIFNNAGGAM GAMYIIHASI 120
  121 TEYLIIFGTA IGTEGHTGRH TADDYFNILQ GTQVAFVPGT FEPEVYPPGT VHHLRRGEVK 180
  181 QYKMEQSCFA LEYARGWIPP MLFFGYADTF TSTLDFPTLW ATTRVTGREM ITNLLRRKF

Type	Start	End	Confidence
Cytoplasmic	1	22	0.77
Transmembrane Helix	23	45	0.69
Non-Cytoplasmic	46	112	0.93
Transmembrane Helix	113	131	0.52
Cytoplasmic	132	239	0.50