YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159124722
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.75
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.74
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	68	0.96
Transmembrane Helix	69	90	0.93
Cytoplasmic	91	98	0.80
Transmembrane Helix	99	119	0.91
Non-Cytoplasmic	120	136	0.85
Transmembrane Helix	137	157	0.93
Cytoplasmic	158	274	0.98
Transmembrane Helix	275	299	0.82
Non-Cytoplasmic	300	316	0.82
Transmembrane Helix	317	340	0.81
Cytoplasmic	341	360	0.89
Transmembrane Helix	361	382	0.85
Non-Cytoplasmic	383	391	0.81
Transmembrane Helix	392	411	0.92
Cytoplasmic	412	448	0.87
Transmembrane Helix	449	470	0.85
Non-Cytoplasmic	471	482	0.73
Transmembrane Helix	483	503	0.87
Cytoplasmic	504	517	0.75
Transmembrane Helix	518	535	0.94
Non-Cytoplasmic	536	550	0.77
Transmembrane Helix	551	573	0.89
Cytoplasmic	574	594	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRAALRAAF AASFLLISIA NALPHGDDES MEMDMGMNME DTAKSEPPKD ANDESPLSYF  60
   61 AYGKHSGTIM AHIALMIIAW CFVLPTAVMF SVARSRFALP SQFVFLVCNA LGLLIGIIYN 120
  121 SQTPDLYENN AHHKIGWIAT WVISAQVVMS LIFACAGRGE RAKASEQEAF LPVPTEEMSD 180
  181 NSHPYPSGIH HAYRWSKDSG QGTERNSSSL HSRPSSPSCS SPSDEYDTFE KPEQVLDKPA 240
  241 HQGWLHGTFL GRFFASRVPR LVSSRVLRVL NIVSLVIDRI ILPFGFVTIA TGAVTYGGIM 300
  301 RGSEVFNGLA HFIKGGIFFW YGLLTLGRWM GCWADFGWAW NIKPSSSIVG KWKAKIPSGE 360
  361 FTESLVIFLY GASNVFLEHL AGWGGAWTAT DLEHVSISIM FFGGGLCGML FESKRIRGWL 420
  421 NSTVLPSPAH ASVHGSADPA WQTPDTQGVS LNPMPALVIL LLGMMMGSHH QTSMMSTMVH 480
  481 KQWGNLLVGF SLARGMTYVL LYLKPPTSYL PSRPPTEIVA SFCLIAGGLI FMLSTRNVVD 540
  541 SMEYYNLDAM FTFTVGMGVT AFIMACEILS IALKAWAVKK ESRPQLPPFQ FPAA