YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70993220, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRSPSIQH PEVNASPVLY RLFPASPAHS FICFFLSSFS RLHSCRFFCR RPECLFVPPA  60
   61 QLVMSSQRYQ RVGSTHLYKT YLYRSLMDTD YLQVNAHDED DEVNSHSSIP LQTAPTPSSP 120
  121 PPSFHSRSSS FSSRRLLQND PHRSDADQTL ADAFGDASDF EGDDEPDDRQ RLMRAHPEPS 180
  181 AGSSREGAPS SAGSNEQTSQ SHQSSSTLQR RPTILPSFST PSSGAGRVIS SSNDGVFANL 240
  241 AAKPERGEKN EDLPPSYEEA AADATPPYWE TTILAPGISS DEVYVDGLPV GSIFSFVWNA 300
  301 MISMSFQLVG FLLTYLLHTT HAAKNGSRAG LGLTLVQYGF YMKGGSDGGS DGGADYVPPP 360
  361 DPNSHNFDPT SVSENSGGNS GSGAISDITT SEWISYVLMI VGWFILIRAI SDFLRARRHE 420
  421 QLVLQSPERG LSVPVIAEGE RSETVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.61
Transmembrane Helix	20	42	0.54
Cytoplasmic	43	295	0.48
Transmembrane Helix	296	317	0.82
Non-Cytoplasmic	318	392	0.75
Transmembrane Helix	393	410	0.91
Cytoplasmic	411	446	0.91