YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|70993820, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFPAFLSPD PTWDGDSTGG PLLLTVRFSA SIPDFPLDIE NPDITTAAGL KQLIRTHLPP  60
   61 NLSSHRLRLI YAGRGLEDAT PLSVSLKLPP SPSRTPVVQE DATTVKGKGK APIREQPRLY 120
  121 IHCSIGDIVL SDADLAAEAA IATTLQQEQA DEDYTGRKKQ QQPPPSTTSA PRGFDRLLSA 180
  181 GFTPSEVSAL RSQFMAIQSV SRTPDTMPTG AELRELEDRW MDEGSSAMAA GVPGGGEGIS 240
  241 FADDDGGFGA GSRGAMDDML WGAVMGFFWP VGCAMWLRRE EGVWSWRKGL AVFVGVVINV 300
  301 AFGAMRIMN

Type	Start	End	Confidence
Cytoplasmic	1	223	0.67
Transmembrane Helix	224	241	0.34
Non-Cytoplasmic	242	258	0.64
Transmembrane Helix	259	277	0.91
Cytoplasmic	278	285	0.64
Transmembrane Helix	286	308	0.85
Non-Cytoplasmic	309	309	0.74