YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159131702
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLPDGCYSS FLVNDSGFCI CNLSLITHPS SVQSTCGKPK RKAVLCKSAV VTGAVFWSHR  60
   61 LYDGSRSERT RLDIISKLTP LLFVAIYFHI FAVPPESSGF LNLATLLLTV GLVDSIFLES 120
  121 VSAARSGISI STKYPIMPGK ILPTFTPAEV ESHNHAKSCF VTLGSKVYDV TSFLNDHPGG 180
  181 GDLILEYAGK DVKEILRDES SHNHSEAAYE ILEDLLVGFL DNKSTGKTAD TNGSATEGSE 240
  241 EDSRPVYAST GMSSEEDLSV ETDIVKDYQT FKFLDLNKPL LLQLWNSGFS KEFYLQQIHR 300
  301 PRHYKGGESA PLFGNFLEPL SKTAWYVVPL LWLPPVTYGS FVGFAGLGNV PTAASYWLFG 360
  361 LFLWTLIEYL MHRFLFHIDG YLPDNRVGIT LHFLLHGIHH YLPMDKYRLV MPPALFVILA 420
  421 TPFWKLAHTV FFYNWYAAVT VFCGGVFGYI CYDMTHYFLH HRNLPAYYKS LKKYHLEHHF 480
  481 ADYENGFGVT SRFWDRVFGT ELKTPPPKGA KAQ

Type	Start	End	Confidence
Cytoplasmic	1	73	0.95
Transmembrane Helix	74	93	0.92
Non-Cytoplasmic	94	99	0.85
Transmembrane Helix	100	118	0.92
Cytoplasmic	119	324	0.97
Transmembrane Helix	325	347	0.82
Non-Cytoplasmic	348	352	0.73
Transmembrane Helix	353	372	0.86
Cytoplasmic	373	406	0.78
Transmembrane Helix	407	427	0.78
Non-Cytoplasmic	428	432	0.72
Transmembrane Helix	433	452	0.92
Cytoplasmic	453	513	0.89