YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TVP18_ASPFU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLAEEFRSR NFSIYGQWTG VLCIILCIAL GIANIFSFAV LRIIFSVLCL ISGLILIFIE  60
   61 VPFLLRICPT SSKFDAFIRR FTTNWMRAAM YGVMSVVQWL SLLPGSGASS LIVAAVFLLI 120
  121 ASIFYALAGL KSQEFVGSKT LGGQGLVQMI V

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	36	0.89
Non-Cytoplasmic	37	42	0.71
Transmembrane Helix	43	64	0.94
Cytoplasmic	65	82	0.89
Transmembrane Helix	83	102	0.92
Non-Cytoplasmic	103	109	0.72
Transmembrane Helix	110	129	0.95
Cytoplasmic	130	151	0.95