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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71002490, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKPLQGTAI ITGGNGTLGS EIAIAIAKTQ PYVHLLLLAR DIRSDSVKDL LQKIRLIGPR  60
   61 SVEVAKVNLA SFNSVVSFCQ NTVERVRTKE IPPVMLLINS AVMASYVTDP VTPDGYDPVY 120
  121 QVNCIAPFLL TVSLLEAFRA GNGTPDGGAR VINIGCSAIS CGSLDYFDDS PDNPPKPPGT 180
  181 PLSAKEGNAR LGSSKLIMSA AMYALRRSLV LRLCFIGGIS LLLLVLIFPS WRAAILPTLS 240
  241 LGLIHSSEDL QLQTVRYYDL SKVQGTAKGW EKGERVLMLT PLRDASSHLP MFFSHLRNLT 300
  301 YPHNLIDLAF LVSDSKDDTL GMLTRMLEEV QNDPDPKMTF GEISVIQKDF GQKVQQDVES 360
  361 RHGFAAQAGR RKLMAQARNW LLSATLRPTH SWVYWRDADV ETAPRTILED LMRHDKDVIV 420
  421 PNVWRPLPDW LGGEQPYDLN SWQESETALA LAETLDEDAV IVEGYAEYAT WRPHLAYLRD 480
  481 PFGDPDMEME LDGVGGVSIL AKAKVFRSGV HFPAFSFEKH AETEAFGKMA KRMGFSVIGL 540
  541 PHYTIWHLYE PSVDDLRHME EMEQERKARE REEKEQAERA ERMKALFVEP GPQWDIDKAF 600
  601 VQDSIQTEKE GPDQTKADGV TGTAEVKDVQ GSASHPVAAS PEPSVNAAPV APVARGGPGE 660
  661 TERKLLELKS PATSHLPNSG TDAEHHDYVN LCTPNRTYRI RLVQSSNPIH ILQPSDGGAQ 720
  721 RGDITMVGAD DEVNLVETVT TIAKCGSTLE LHTPSEGFSA VSFLERMLAV YDGDEGSEAV 780
  781 GFDLESSEKE GIIRRVFEDV PVSRAQCEAG WIEICAFVLG RVHKDEDATR CCRRPSAKAK 840
  841 LEVWKRVLES AVLQGIHLDQ QFLVSDLWKS VLDDGDEEPF PRALFEAIVR RVCEADGEAQ 900
  901 GLFDGDMKCE LLPWRLGNRS MSDGDSRTGA RIDKARCTRW VGETYLEARA PAQGSAIGLS 960
  961 EFLNDWKDHL PDSWRDEVAL SKLTVCARL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle