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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHO2_ASPFC
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGLSTGAH QADDGLRERT VASQSSSAPG LEALTATGEG EVKDKAGKGK KTYGRTPQGK  60
   61 VFTVPQTHDM VSQLLSPSEP KNLSDVIVLA ILAAHILLLW RLPAGVKVPV FAFIYLFWRG 120
  121 AYNAGIGWLL HNQSNHRTLV RWAEKTKIFV NPATGQNPHA NLYKLIKREL ETKIPADYSF 180
  181 EDAPIEYNTW LVFRRLVDLI LMCDFTSYCL FAIACSQRPF DEGTLMTVLR WSAGIVLVLF 240
  241 NLWVKLDAHR VVKDYAWYWG DFFFLIDQEL TFDGVFEMAP HPMYSVGYAG YYGISLMAAS 300
  301 YKVLFISILA HAAQFAFLVF VENPHIEKTY NPPPPRKRTI EQENVSITPQ RSDSPSAPAS 360
  361 VDEQVPHAPS YSSGPPPSVH NLLGFRNLDL YRTIDTSSIL IQFLVFALTV LTPSTPWFQF 420
  421 LFVANAAVWR IWYSVGIGFV LNRQSNCKAW TRHFVKYGES PQEAWNQWKG TYHISMVMCY 480
  481 ASFIAAVWKM YSFPADWGYG LVLLRHVLGA GLIALQIWTS VSIYESLGEF GWFYGDFFFD 540
  541 ESPKLTYDGI YRFLNNPERV LGLAGVWGAV LITSSGAVTF LALMSHILSL GFIQFVERPH 600
  601 MQKLYGRSLR RDAGLTKSLK RSLPPSLQQL HGSVDKIFDE SFEFIEELID TARPKLAAGV 660
  661 NTFVKDTSAL FQKYPARVTI SRIDEDLAGY DLRDYSLEIE GTDSLSPNDN DQSGREGANA 720
  721 RMPLDRRGDL KNLVFEYGSP IKVKWTAPLN HSKKDWIGLY RVTDNTSREV TRVSSQGRWI 780
  781 AVNEGSYDNL TCEKGIVSSD ILIPASQRKD NENRDLASGE VIFSGDKLFW TQGVFEFRYH 840
  841 HNGKHNVMAI SRPFEIRISR FDEDEIPLMN PTSVELSLFP VVRNCLDRDP QIAPETVDEP 900
  901 FGGLVERDGK YAKRVVFAVH QM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle