YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67156800, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKKAQLII EGNAPVELPM LTGTVGPDVI DVRGLTSTGH FTFDPGFMST ASCESKITYI  60
   61 DGDKGILLHR GYPIEQLAEK SDYLETCYLL LNGELPNADQ KAKFVNNIKN HTMVHEQLKN 120
  121 FLNGFRRDAH PMAVMCGVVG ALSAFYHDSL DINDPQHREI SAIRLVAKMP TLAAMVYKYS 180
  181 LGQPLMYPRN DLDYAENFLH MMFNTPCEVK PISPVLAKAM DRIFVLHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGIAAL WGPAHGGANE AVLTMLDEIG DVSNIEKFVA KAKDKNDPFK 300
  301 LMGFGHRVYK NFDPRAKVMK QTCDEVLSEL GINDPQLELA MKLEEIARND PYFKERNLYP 360
  361 NVDFYSGIIL KAIGIPTSMF TVIFALARTV GWISHWKEML SGPYKIGRPR QLYTGYEKRD 420
  421 YISVEKR

Type	Start	End	Confidence
Cytoplasmic	1	244	0.60
Transmembrane Helix	245	265	0.56
Non-Cytoplasmic	266	367	0.91
Transmembrane Helix	368	392	0.76
Cytoplasmic	393	427	0.81