YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40557353, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKNVLYF QAGLGVLANM FLLIFYIFII PGHRPKPVDL ISCQLTFIHI IMILTGWDIW  60
   61 LADMFELLNI DNDFKCKATI YMNRVMRGLS ICVTCLLSVF QAVTISPNTS LLAKFKHKFK 120
  121 KYIIYAFFYF WSFNLSFSSN QIFSVGAYTN MSETNQMRVT KFCSHFPMNS IIRGLILTLT 180
  181 TLRDVFLVGV MLSTSAYMVV FLFRHQRQCK HLHSINHLRV SPEKRATQTI LLLVICFVFM 240
  241 YWMDFIISST SILLWKYDPV ILTIQKFVMN VYPTITPLVQ ISSDNRIINV LKNLWPKCQQ 300
  301 AS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.78
Transmembrane Helix	8	30	0.94
Cytoplasmic	31	39	0.74
Transmembrane Helix	40	61	0.89
Non-Cytoplasmic	62	87	0.77
Transmembrane Helix	88	107	0.86
Cytoplasmic	108	121	0.73
Transmembrane Helix	122	144	0.84
Non-Cytoplasmic	145	184	0.83
Transmembrane Helix	185	205	0.92
Cytoplasmic	206	225	0.95
Transmembrane Helix	226	245	0.93
Non-Cytoplasmic	246	302	0.89