YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57166781, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKLNFLPY FSFIPKKLNT NSIIFKIIKV FFIAILLSNS IYLSFFENIF TQTISPFLAI  60
   61 WGLVLLLKSK NSKQYFWIGF FVGILWFWWI GLSSIYFNLN YLVPIIPIII GFIYGLLFRL 120
  121 CYLLKFDFLR LCGIFCISFI HPLGFDWLNW GIFTVYGFFD PSYRGIICIF LIAYFIYEGY 180
  181 ISRYYKIAIV LILFFSGFQY NEKQAQTLNL NYKLINTNIS QNQKFLQENL KSNSDILIQD 240
  241 ILQAINEKKE LVILPETAFA FDLKNTKYEL MLKELSYKIT IITGAFHVEK EHTYNSTYIF 300
  301 KKGNVYILNK HFLVPFGEEI PFFKDLTKKY FLKNIEEFSK GPIQSKYKLD NQIITNAICY 360
  361 EATKEQNYQN SQIIIALSNN AWFNNSSEYK LQQLLMKFYA SKYGVSVYHA TNGKENIVIL 420
  421 PKKLLSKDWK NLSKEIFNDK K

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.86
Non-Cytoplasmic	44	48	0.79
Transmembrane Helix	49	67	0.95
Cytoplasmic	68	74	0.88
Transmembrane Helix	75	92	0.96
Non-Cytoplasmic	93	100	0.65
Transmembrane Helix	101	121	0.90
Cytoplasmic	122	127	0.77
Transmembrane Helix	128	145	0.93
Non-Cytoplasmic	146	160	0.65
Transmembrane Helix	161	177	0.91
Cytoplasmic	178	183	0.67
Transmembrane Helix	184	200	0.64
Non-Cytoplasmic	201	441	0.65