YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237369, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFKNMLHQI GQLYQNLTRK QRIVIAASIV VVVGFLVFLA LFRGSGSNAN NGYAVLVENV  60
   61 SPSSSAAIVA KLEQNNIPYK LESENKILVP QDQVYRQRMF IASEGLIKDS RVGFEAFDTQ 120
  121 AFGATNEEQK VKYQRAIEGE LARTIETLEP IRSAVVHIAF PKDSVFTERQ IPPTASVVVN 180
  181 VREGLKLTRK QIDGIKNIVS AAVPKLTKEN VKISDQSGVP LDEQEAYEDD LVRAQIKFKS 240
  241 DQEKALEDKI IENLAPFAGG MDKVKVSVNI DFDFSKQESQ SEIYDPNPIV RSEQTLNEER 300
  301 TGRKDPEIQG VPGAVSNIGP VEGLDNKGQI DTYKKNQVTT NNELSKTITN TKKQFATVLR 360
  361 TSAAVTIDGK YQDVVDENGD VKSEYVPLTK EELASVESIV KNTINFSATR GDSVVVQNLP 420
  421 FHRESIRVES KVKTFYNRFV EPFIPPVKYF IAAILLFIFY KKVIAPFTQK MLEDVAAQEE 480
  481 MQQGPNAVLD DAEDALEKFN AARKKVEEQL GFGDNFNEDS IQYEVLLEKL RGLVSDKGEE 540
  541 IAALLQNLIQ NDSEFGEKDM

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	560	0.95