YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62632740, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.83
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	176	0.99
Transmembrane Helix	177	196	0.96
Cytoplasmic	197	222	0.95
Transmembrane Helix	223	245	0.92
Non-Cytoplasmic	246	251	0.79
Transmembrane Helix	252	273	0.94
Cytoplasmic	274	296	0.93
Transmembrane Helix	297	316	0.94
Non-Cytoplasmic	317	322	0.87
Transmembrane Helix	323	341	0.93
Cytoplasmic	342	349	0.81
Transmembrane Helix	350	371	0.92
Non-Cytoplasmic	372	415	0.97
Transmembrane Helix	416	437	0.88
Cytoplasmic	438	445	0.89
Transmembrane Helix	446	467	0.95
Non-Cytoplasmic	468	474	0.78
Transmembrane Helix	475	493	0.96
Cytoplasmic	494	564	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEITTIGIM RFLSSLLLAA LIVEQVLGEY GMAHFSDWGN SKGKDYCIFF NSQWARLPQD  60
   61 LSKATRLQTY DLTSSVLCSP SDVPEGGFTN SIPMVMRGNC TFYEKVRLAQ INGAKGLLIV 120
  121 SKDRLTPPSG NKSQYEEIGI PVALLSYKDM LDISKTFGEK RQVAMYAPNE PVVDYNMVLI 180
  181 FLMAVGTVAL GGYWAGSRDI KKRYMKHKRD DGAEKQDEET VDVTPIMICV FVVMCCSMLV 240
  241 LLYFFYDQLV YMTIATFCLA SAVSLYSCLW PFVRRIPFGK CRIPENNLPY CHKRPQVRML 300
  301 ILSAFCIGVS VTWGVFRNED QWAWILQDAL GIAFCLYMLK TIRLPTFKAC TLLLVVLFVY 360
  361 DVFFVFITPL LTKSGESIMV EVAAGPSDSS THEKLPMVLK VPRLNSSPLV LCDRPFSLLG 420
  421 FGDILVPGLL VAYCHRFDIL MQTSQIYFLA CTIGYGIGLL ITFVALTLMQ MGQPALLYLV 480
  481 PCTLLTSLAV ALWRKELPLF WTGSGFVPPP IIMEQINCTQ TPGPSTDEPP SNPEPATSET 540
  541 NNQREDPTPA TQEEVPHLTD ASNT