YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CXB6_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWGTLHTFV GGVNKHSTSI GKVWVTVLFV FRVMILVVAA QEVWGDEQED FVCNTLQPGC  60
   61 RNVCYDHFFP VSHIRLWALQ LIFVSTPALL VAMHVAYYRH EAARRFRRGE TRSEFKDLED 120
  121 IKRQKVRIEG SLWWTYTSSI FFRIVFEAAF MYVFYFLYNG YHLPWVLKCG IQPCPNLVDC 180
  181 FISRPTEKTV FTIFMISASV ICMLLNVAEL CYLLLKVCFR RSKRAQTQKA PPNHALKESK 240
  241 QNEMNELISE GGQNAITGFP S

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	41	0.89
Non-Cytoplasmic	42	75	0.97
Transmembrane Helix	76	98	0.95
Cytoplasmic	99	131	0.99
Transmembrane Helix	132	156	0.90
Non-Cytoplasmic	157	190	0.97
Transmembrane Helix	191	215	0.90
Cytoplasmic	216	261	0.98