YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67010017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMQTPGGP SPGQTCVLIL IFTVLLQALC VALTYVYFTN ELKQMQDKYS KSGIACFLKE  60
   61 DDSFWDPTDD ERMLSPCWQV KWQLRQFVRK MILRTYEETI STVSEKQQGI PHLEREKGPQ 120
  121 RVAAHITGTS RKRSTFPSLS SKYEKALGQK INSWESSRKG HSFLNNFHLR NGELVIHQTG 180
  181 FYYIYSQTYF RFQEPEEILG TVSTEGNRKK NRQMIQYIYK WTSYPDPILL MKSARNSCWS 240
  241 KDSEYGLYSI YQGGIFELKE DDRIFVSVTN EQLIDMDQEA SFFGAFLIG

Type	Start	End	Confidence
Cytoplasmic	1	15	0.31
Transmembrane Helix	16	33	0.56
Non-Cytoplasmic	34	289	0.74