YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|224173107, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVLSSLAA LPPAFLIVAA GVVGLMVGSF LNVVIHRLPK MMEYDEANYI AEIRGEPLPH  60
   61 PERYNLMVPR SACPKCGHQI APWENIPVIS YLFLRGRCKA CKTPIGIRYP LVELITAALS 120
  121 ALAMWHFGPT AQALAAIVMT WSLVALFMID ADTQLLPDQI TLPLLWLGLL LNLQGLFAPL 180
  181 ADAVIGAAAG YLLLWSVYWL YKLVRGREGM GHGDFKLMAA LGAWFGWQAL PALILMSSVV 240
  241 GAVLGGAMLV FRRKSSDTTF PFGPYIVGAG LIVLFFGADV LPLTLVAGH

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.85
Transmembrane Helix	13	34	0.93
Cytoplasmic	35	104	0.96
Transmembrane Helix	105	125	0.86
Non-Cytoplasmic	126	130	0.68
Transmembrane Helix	131	151	0.87
Cytoplasmic	152	163	0.70
Transmembrane Helix	164	194	0.77
Non-Cytoplasmic	195	226	0.66
Transmembrane Helix	227	251	0.86
Cytoplasmic	252	261	0.67
Transmembrane Helix	262	283	0.89
Non-Cytoplasmic	284	289	0.64