YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56965787, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLEVRERTA RNHPKRALCL SIIPGLGQLY NRRYGKGSFF FILFAAFIIV FYDILNIGYW  60
   61 GIITLGTLER VDDSRMLLAQ GIIALILTVF AVGFYLFNLR DAYKDAKRIQ QGWRIPSLRE 120
  121 SFQQAWDKGF PYLLVGPGLV FLIFTVVFPL LFMVGLAFTN YTLYNAPPRN LLDWVGFENF 180
  181 VQLVTVPIWR ETFFSVFSWT LIWTFVATTC QVGLGLLLAI MVNDPRIKFK KFIRTILILP 240
  241 WAVPAFVTIL IFSAMFNDNF GAINRDIFIP LFGHGFPWLT DPFWARFALI MIQTWLGFPF 300
  301 VFALFTGVLQ SISSDWYEAA DMDGANRWQK FRHITLPHLL FATAPLLIMQ YTGNFNNFSI 360
  361 IYLFNQGGPP IRGQNAGGTD ILISWVYSLT FENSQYSMAA AISIIIGLIV AGFALLQFRR 420
  421 SRSFKEEGSI

Type	Start	End	Confidence
Cytoplasmic	1	38	0.93
Transmembrane Helix	39	60	0.90
Non-Cytoplasmic	61	76	0.86
Transmembrane Helix	77	99	0.93
Cytoplasmic	100	131	0.92
Transmembrane Helix	132	157	0.84
Non-Cytoplasmic	158	198	0.91
Transmembrane Helix	199	222	0.90
Cytoplasmic	223	231	0.95
Transmembrane Helix	232	256	0.85
Non-Cytoplasmic	257	284	0.93
Transmembrane Helix	285	309	0.85
Cytoplasmic	310	333	0.88
Transmembrane Helix	334	353	0.91
Non-Cytoplasmic	354	395	0.94
Transmembrane Helix	396	416	0.95
Cytoplasmic	417	430	0.91