YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57237852, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAVKGITTE TGYIVNAALA ISLLLFSIKK AMDGQTNPVF ELGKMFVLFA VVWYIFLRAP  60
   61 NDNNHRFMIH DEVTSKDYVI SQIPIGIGKS FALMTQFEKV ILEAMEKHFS TPQSTNFSNA 120
  121 GLGFSLQVMS TLPSVKLSAI DATLQKNIDF YFRNCVSVGI LLNQQGRNLF QNSDNLIQDL 180
  181 FTNIGNGSQL TPLFENNNNI EKQSVVPCSD AGPQIVEMIK NDTDEAMKIH AALLGMANDM 240
  241 ANYEQKFLGA AQIYNEQAVS ARSYLQQSMI MLASQDAIIN TAKSVGLNPA SVAANTAYAD 300
  301 QQFYASMQAQ GHLAQTYLPL AKAYLTAIII GLSWLVALLS IVFGSYAHIK MFFTLCIWIV 360
  361 LWTPILCIIN FINDFNLMNV AQVITGGKAA LSLGDNILIF KEVANRSNFM NYLVMSTPVL 420
  421 AYAIAKASEQ GFVTFASGLS QALTGASRAA GSFANQQALS TQTSIAAPRG DEVWAVDAGV 480
  481 MSLQSAISAG GGRFSMSSIT GGGTTARDVN TGTSFALGNH GEISNMNRT

Type	Start	End	Confidence
Cytoplasmic	1	11	0.71
Transmembrane Helix	12	31	0.83
Non-Cytoplasmic	32	39	0.69
Transmembrane Helix	40	57	0.89
Cytoplasmic	58	322	0.79
Transmembrane Helix	323	344	0.91
Non-Cytoplasmic	345	350	0.47
Transmembrane Helix	351	372	0.90
Cytoplasmic	373	529	0.57