YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58004772, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHLWVLCFV LFPSSLSYPE SWMPLINLTH HILRDANSSL FPNCWVCLST QTQRSLAVPA  60
   61 PLSTWTDTPM KLHLTYSVKA FPGSFPISDL ERRLRLFHPL IASYPFHNPE RRAITFLQLV 120
  121 SSTGIFRIIT RITSVIYPEK DRFFESAQRP LWGPLFTETV LRSQAPLCIS RFFKVSAYAT 180
  181 FVGNLSASLC NYTLRISPST SHENLDLSIT HPFKQAMKRP NAKWKNPLRF SGPPSLIFSK 240
  241 PSYHPCPADK YCHTSPATPW MRCPHAPSST CYNLTLFESD NLTHPVTMSV DSTHFKAKLQ 300
  301 GRRDPYPLSH YQPIPGAALS GQYSVWENEI TIQENWGVTS NIFSHLLSFS YIFCLNSSGV 360
  361 FFLCGTSTYV CLPANWSGVC TLVFQYPDIE LLPNNQTVPV PLFASVLSSA SVLRPKRSPH 420
  421 LLPFLAGLGI SSALGTGIAG LASSTLYFQR LSKALSETLE EIAASITTLQ NQIDSLAGVV 480
  481 LQNRRALDLI TAEKGGTCLF LQEECCFYVN QSGIVRDAAR KLRERASELS QHSDSWGQWP 540
  541 DPGRWLPWLT PFLGPLLFIF FLLTFGSCLL NCLTRFVSQR LGSFVQDTAK MQVDSILQNF 600
  601 QYKKLPQDSK MRTLFLCNRK KL

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	348	0.95
Transmembrane Helix	349	372	0.72
Cytoplasmic	373	420	0.72
Transmembrane Helix	421	442	0.92
Non-Cytoplasmic	443	548	0.89
Transmembrane Helix	549	573	0.85
Cytoplasmic	574	622	0.89