YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56680685, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.92
Transmembrane Helix	10	33	0.93
Non-Cytoplasmic	34	51	0.91
Transmembrane Helix	52	73	0.92
Cytoplasmic	74	85	0.94
Transmembrane Helix	86	107	0.94
Non-Cytoplasmic	108	128	0.91
Transmembrane Helix	129	147	0.94
Cytoplasmic	148	156	0.75
Transmembrane Helix	157	177	0.93
Non-Cytoplasmic	178	191	0.91
Transmembrane Helix	192	214	0.85
Cytoplasmic	215	226	0.82
Transmembrane Helix	227	249	0.92
Non-Cytoplasmic	250	258	0.89
Transmembrane Helix	259	283	0.86
Cytoplasmic	284	293	0.91
Transmembrane Helix	294	316	0.93
Non-Cytoplasmic	317	334	0.89
Transmembrane Helix	335	357	0.87
Cytoplasmic	358	370	0.87
Transmembrane Helix	371	393	0.90
Non-Cytoplasmic	394	414	0.91
Transmembrane Helix	415	439	0.89
Cytoplasmic	440	455	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYESQKIAL VYFAVAMGLF AIQVLGGLLA GWIYVAPNTL SELLPFNIVR MLHTNSLIVW  60
   61 LILGFFGAAY FLIPEEAERE IHSTKLAYIQ LAILVLGTLG VVVTYVFNLF EGHWLLGKEG 120
  121 REFIEQPKWV KAGIVVAALI FLYNVSMTVL KGKKTAITNI LLLGLWGLAL LFLFSFYNPS 180
  181 NLALDKQYWW YIVHLWVEGV WELIMASILA YLMLKLTGVD REVVEKWLYV IVAAALFSGI 240
  241 LGTGHHYYWI GTPGYWQWIG SIFSSLEVIP FFAMMAFAFV MVWKGRRDHP NKAALLWSLG 300
  301 CATLAFFGAG VWGFLHTLHG VNYYTHGTQI TAAHGHLAFF GAYVSLNLAI FSYAMPILLN 360
  361 RDPYNQVLNM ASFWLMSSGM VFMTFVLTFA GTIQTHLQRV LGEYFMDVQD QVAIFYWMRF 420
  421 GSGLVVVIGA LLFIYAMWVP RREIIERGTA ETPAE