YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56709017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.83
Transmembrane Helix	41	59	0.75
Non-Cytoplasmic	60	64	0.54
Transmembrane Helix	65	86	0.75
Cytoplasmic	87	144	0.64
Transmembrane Helix	145	159	0.58
Non-Cytoplasmic	160	160	0.00
Transmembrane Helix	161	175	0.50
Cytoplasmic	176	191	0.54
Transmembrane Helix	192	215	0.85
Non-Cytoplasmic	216	284	0.59
Transmembrane Helix	285	304	0.65
Cytoplasmic	305	308	0.68
Transmembrane Helix	309	331	0.81
Non-Cytoplasmic	332	337	0.70
Transmembrane Helix	338	359	0.95
Cytoplasmic	360	371	0.87
Transmembrane Helix	372	393	0.84
Non-Cytoplasmic	394	398	0.70
Transmembrane Helix	399	417	0.80
Cytoplasmic	418	460	0.68
Transmembrane Helix	461	483	0.86
Non-Cytoplasmic	484	489	0.72
Transmembrane Helix	490	513	0.82
Cytoplasmic	514	524	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDMGMQGGP VAPSTAVGDF AGQNGAYYSA AFKRIQDTTG FAWSWNTMAA LFGPIWGAAR  60
   61 GVWGFFWMFL VLELFALVQL GRGLWGELGS QQLAKLDRAL ANIAKREAQA AELQAAGDAA 120
  121 GAEAKLKIAE NLKKVAARAQ EQADLAAAEA TSILLIGLAL LLLVKLLEGF YANIAYEAHY 180
  181 LKWRAKPQSQ QAGIRTSSIV FGVVMVLAIV PLTLLRFTVT NPDQVLARLT GGLFGDTIPV 240
  241 THFPVEKEYF SALSKRGDAG FDWAADNFSD AFDGITAGIR WFLDGLEILL LQTPWPVVML 300
  301 VIVVAASRLA GLRVAIFTAA SLAYLAFMGL WELSMITVAL IGTGAILCIL IGVPFGIWFG 360
  361 KSRRAYAIAE PVLDFMQTMP AFVYLIPIIA FFGTGKPPGV LATLIFAMPP VVRLTALGMR 420
  421 GVPETTKEAA IAFGCSPWQL LFNVELPLAL PSIMTGINQT ILMSLSMVVI ASLIGADGLG 480
  481 ALILESLQYA AKGQGLLGGL AILLCAMVID RIAQGIYRKR VGGA