YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58336990, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.68
Transmembrane Helix	8	27	0.89
Cytoplasmic	28	44	0.87
Transmembrane Helix	45	65	0.92
Non-Cytoplasmic	66	73	0.70
Transmembrane Helix	74	94	0.89
Cytoplasmic	95	101	0.86
Transmembrane Helix	102	123	0.90
Non-Cytoplasmic	124	133	0.82
Transmembrane Helix	134	155	0.88
Cytoplasmic	156	161	0.75
Transmembrane Helix	162	182	0.87
Non-Cytoplasmic	183	186	0.81
Transmembrane Helix	187	206	0.94
Cytoplasmic	207	212	0.80
Transmembrane Helix	213	232	0.91
Non-Cytoplasmic	233	239	0.74
Transmembrane Helix	240	260	0.94
Cytoplasmic	261	293	0.93
Transmembrane Helix	294	313	0.95
Non-Cytoplasmic	314	319	0.72
Transmembrane Helix	320	341	0.88
Cytoplasmic	342	389	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKIIVELFL LVIISAAITP FIRRLAFVLG AVDNPNARRV NKKPMPTIGG LGIFVTFNIG  60
   61 AFVLLREQFP THEIFSILLA SSVVVLTGLI DDILELKPRQ KMFGIFIASL IIYFLAGIRM 120
  121 NVLKLPFITN EINLGWWSFP ITIFWILALT NAVNLIDGLD GLADGVSMIS LTTMGIVGYF 180
  181 FLHTHQLYVP IACFMLAACL LGFLPYNFHP AKIFLGDTGA LYIGFMIAVL SLKGLKNVTF 240
  241 ISLLVPIIIL GVPITDTVYA MIRRKLNKKP ISEADKHHLH HQLMRMGLTH RQTVLTIYAL 300
  301 SLVFSFISLL FLLSPAWGTW LLILGLLVAL EYFVESIGLL GEKYHPLMHI IQKVINQKSK 360
  361 IDPTVEVWHL GDEKPDQLKA EKDRKNYKK