YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56461488, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.94
Transmembrane Helix	11	34	0.91
Non-Cytoplasmic	35	52	0.98
Transmembrane Helix	53	76	0.90
Cytoplasmic	77	91	0.91
Transmembrane Helix	92	113	0.91
Non-Cytoplasmic	114	146	0.92
Transmembrane Helix	147	165	0.96
Cytoplasmic	166	192	0.87
Transmembrane Helix	193	214	0.88
Non-Cytoplasmic	215	231	0.84
Transmembrane Helix	232	253	0.91
Cytoplasmic	254	261	0.87
Transmembrane Helix	262	284	0.92
Non-Cytoplasmic	285	317	0.93
Transmembrane Helix	318	338	0.92
Cytoplasmic	339	348	0.80
Transmembrane Helix	349	368	0.96
Non-Cytoplasmic	369	406	0.93
Transmembrane Helix	407	428	0.85
Cytoplasmic	429	448	0.84
Transmembrane Helix	449	470	0.91
Non-Cytoplasmic	471	477	0.66
Transmembrane Helix	478	498	0.93
Cytoplasmic	499	680	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEKQKWHS AILLPVFLPA VIVIALLVIG TLSAPEKAGE LFDWTLAGIT DNFGWFYMLA  60
   61 VALFLMFIIG VAVSSWGKIK LGPDHCEPEY SFTSWFAMLF SAGYGIALLF FGVSEPILHY 120
  121 AEPPAGAAET VSSAKQAMQI AYFHWGFHIW AIYGLVGLVL AYFSFRHGLP LSMRSTLYPL 180
  181 IGDRINGPIG HTVDTFAILG TMFGIATTLG LSVIQINAGL NYLWEDIPVG KTVQVISIGV 240
  241 ITLAAIASVV AGMDKGIKRL SLINITLVIF LLLFVFAVGP TIHILETFLQ NTGAYISGIV 300
  301 ERTFNLQAYE RSDWIGNWTL FIFGWTIAWA PFVGLFIAKI SRGRTIRQFV FGVMLVPTIF 360
  361 TFFWFAVFGD TALNMIMNEG YTTLISEVQD NQAVALFKLY ENLPMTSVLS FLTVLLIITF 420
  421 FVTSSDSGSL VIDSLSSGGM METPVWQRVF WASTEGIVAS VLLVAGGLGA LQTAAITSAL 480
  481 PFAIIILISA AGMWRALIIE GHQSKSLQSH RHSHRRGVNE GADYWKKRLA GLVDFPNKES 540
  541 VLKFINGPAT ESMKKVRDEL KDQDWPAEFR ADEEHNRIIL SVERKGDLEF AYEIRLKDYL 600
  601 LPEYALTNDE GREVYYRAEV FLRQGGQSYN LYGYEQTDII NDVINQFENY LHFRHNSPGV 660
  661 LPWDLEKHDE DLNEDLESQK