YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MURG_SALPA
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGQPKRLMV MAGGTGGHVF PGLAVAHHLM AQGWQVRWLG TADRMEADLV PKHGIDIDFI  60
   61 RISGLRGKGV KALLAAPLRI FNAWRQARAI MKRFKPDVVL GMGGYVSGPG GLAAWSLGIP 120
  121 VVLHEQNGIA GLTNQWLARI ATTVMQAFPG AFPNAEVVGN PVRTDVLALP LPQVRLAGRD 180
  181 GPIRVLVVGG SQGARVLNQT MPQVAARLGD TVTIWHQSGK GAQLTVEQAY AGTGQPQHKV 240
  241 TEFIDDMAAA YAWADVVVCR SGALTVSEIA AAGLPAIFVP FQHKDRQQYW NALPLENAGA 300
  301 AKIFEQPQFT VEAVADTLAG WSREALLTMA ERARAVSIPD ATERVASEVS RVART

Type	Start	End	Confidence
Cytoplasmic	1	7	0.77
Transmembrane Helix	8	31	0.78
Non-Cytoplasmic	32	68	0.77
Transmembrane Helix	69	83	0.44
Cytoplasmic	84	97	0.58
Transmembrane Helix	98	119	0.67
Non-Cytoplasmic	120	355	0.78