YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LFG1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHEKSFLVS GDSYPPPNPG YPGGPQPSMA PYPGAPYPQA PFQPSPYGQP GYPQGPSPYP  60
   61 QGGYPQGPYP PGGYPQGPYP PGGYPQGPYP PGGYPQGPYP QSPFPPNPYG QPQAFPAQDP 120
  121 GSPHHGNYHE EGPPSYYDNQ DFPATNWDDK SIRQAFIRKV FLVLTLQLSV TLSTVAVFTF 180
  181 VGEVKGFVRE NVWTYYVSYA IFFVSLIVLS CCGDFRRKHP WNLVALSILT VSLSYMVGMI 240
  241 ASFYNTEAVI MAVGITTTVC FTVVIFSMQT RYDFTSCVGV LLVSVVVLIL FAILCIFIRS 300
  301 RVLEIVYASL GALLFTCFLA VDTQLLLGNK QLSLSPEEYV FAALNLYTDI INIFLYILTI 360
  361 IGRAKE

Type	Start	End	Confidence
Cytoplasmic	1	159	0.98
Transmembrane Helix	160	182	0.92
Non-Cytoplasmic	183	191	0.93
Transmembrane Helix	192	213	0.91
Cytoplasmic	214	220	0.85
Transmembrane Helix	221	242	0.89
Non-Cytoplasmic	243	247	0.77
Transmembrane Helix	248	268	0.79
Cytoplasmic	269	276	0.66
Transmembrane Helix	277	298	0.94
Non-Cytoplasmic	299	304	0.68
Transmembrane Helix	305	327	0.86
Cytoplasmic	328	338	0.72
Transmembrane Helix	339	362	0.69
Non-Cytoplasmic	363	366	0.52