YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60551245
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMNSVISEM RQPAKGPGEP PVVAKRPSAK TAKKAKRATV YFEVEILDAK TREKLCFLDK  60
   61 VEPHATIADI KNMFTKSHPQ WYPARQSLRL DPKGRSLKDE DILQNLPVGT TATLYFRDLG 120
  121 AQISWVTVFL TEYAGPLVIY LLFYFRVPFI YGPKYDFITS RHSVVHLACI CHSFHYIKRL 180
  181 LETLFVHRFS HGTMPFRNIF KNCMYYWGFA AWMAYYINHP LYTPPTYGED QVKLAVIIFL 240
  241 FCQLGNFSIH IALRNLRPAG SKTRKIPFPT RNPFTWLFLL VSCPNYTYEV GSWIGFAIMT 300
  301 QCLPVALFTL VGFIQMTIWA KGKHRSYLKE FRDYPPLRSP IVPFIL

Type	Start	End	Confidence
Cytoplasmic	1	122	0.94
Transmembrane Helix	123	144	0.82
Non-Cytoplasmic	145	157	0.74
Transmembrane Helix	158	177	0.76
Cytoplasmic	178	197	0.91
Transmembrane Helix	198	217	0.88
Non-Cytoplasmic	218	233	0.82
Transmembrane Helix	234	253	0.96
Cytoplasmic	254	271	0.89
Transmembrane Helix	272	288	0.93
Non-Cytoplasmic	289	296	0.64
Transmembrane Helix	297	319	0.90
Cytoplasmic	320	346	0.97