YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|189021461, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.89
Transmembrane Helix	7	25	0.97
Cytoplasmic	26	33	0.84
Transmembrane Helix	34	55	0.93
Non-Cytoplasmic	56	81	0.89
Transmembrane Helix	82	104	0.91
Cytoplasmic	105	113	0.79
Transmembrane Helix	114	131	0.94
Non-Cytoplasmic	132	137	0.61
Transmembrane Helix	138	157	0.88
Cytoplasmic	158	167	0.76
Transmembrane Helix	168	190	0.92
Non-Cytoplasmic	191	206	0.82
Transmembrane Helix	207	227	0.88
Cytoplasmic	228	244	0.60
Transmembrane Helix	245	266	0.73
Non-Cytoplasmic	267	274	0.78
Transmembrane Helix	275	296	0.95
Cytoplasmic	297	303	0.79
Transmembrane Helix	304	331	0.78
Non-Cytoplasmic	332	336	0.49
Transmembrane Helix	337	353	0.82
Cytoplasmic	354	371	0.83
Transmembrane Helix	372	393	0.90
Non-Cytoplasmic	394	414	0.90
Transmembrane Helix	415	436	0.87
Cytoplasmic	437	463	0.92
Transmembrane Helix	464	485	0.93
Non-Cytoplasmic	486	505	0.82
Transmembrane Helix	506	528	0.89
Cytoplasmic	529	578	0.98
Transmembrane Helix	579	599	0.90
Non-Cytoplasmic	600	610	0.73
Transmembrane Helix	611	629	0.94
Cytoplasmic	630	635	0.83
Transmembrane Helix	636	656	0.94
Non-Cytoplasmic	657	662	0.75
Transmembrane Helix	663	684	0.90
Cytoplasmic	685	704	0.98
Transmembrane Helix	705	726	0.92
Non-Cytoplasmic	727	763	0.91
Transmembrane Helix	764	782	0.93
Cytoplasmic	783	819	0.96
Transmembrane Helix	820	843	0.88
Non-Cytoplasmic	844	850	0.81
Transmembrane Helix	851	871	0.92
Cytoplasmic	872	884	0.85
Transmembrane Helix	885	907	0.90
Non-Cytoplasmic	908	929	0.92
Transmembrane Helix	930	953	0.90
Cytoplasmic	954	972	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMDGRILFL LVLLPFLGSA ITGLFRRADR SGSAWFTAAI ALVAFVATAS IYPIVSGGKI  60
   61 LHGTLEWLPA YGLNVTLRMD GFAWLFAMLI TGIGLLVVIY ARYYMSPEDP VPRFFSFLLG 120
  121 FMGSMLGIVL SGNIVLLAVF WELTSVFSFL LIGYWYHNAS ARDGARMVLT VTGIGGFCLL 180
  181 AGVLLLGHVV GSYDLDRVLA AGDLVRAHPL YTVILVLIAL AAFTKSAQFP FHFWLPNAMA 240
  241 APTPVSAYLH SATMVKAGVF LLARLWPVLA GTEEWFWILG GAGLISLLIA SFFAVFQQDL 300
  301 KGLLAYSTIS NLGLITVLLS LGSPLAAVAA IFHMVNHAIF KASLFMAAGI IDHETGTRDM 360
  361 RRLSGLLKPM PYTATLAMVA SAAMAGVPLL NGFLSKEMFF AESVETHLVS WLDTITPYVA 420
  421 TIAGIFTVAY SVRFIYSTFF GPPPHDLPKE PHEPPHWMRR PIELLVLLCL LIGIVPGLSI 480
  481 GPFLHSAVIS VLGQATPVYS LAVWHGFNLP LMMSIVAMVG GILLHWLLKN YLATSEDGPP 540
  541 FFRHLQGQRI FERVLVTLSW NWARKAETFL STRRLRPQLR IVVAFAVVAA AWPILEAGIP 600
  601 TGMLGVQPVD PIFAGLWILG GACAVGAAYQ AKFHRLVALI LLGGAGLITC ITFVWLSAPD 660
  661 LAVTQLLVEI VTTVLLLLGL RWLPKRWEDP DAAASVNFGP RLRRYRDLAL AVVSGAGVAV 720
  721 IAYAMMTRPS PSSIGDYFLE NAYSGGGGMN VVNVILVDFR AFDTFGEIAV LGIVSLTVFA 780
  781 LLRRFRPAPE STGSTDQQKI QDAYDEAMPG RKAGETLADY LAVPSVIMHW LFPVIIVLAV 840
  841 HLFLRGHDFP GGGFAAGITL AIAFLLQYLA SGTRWVEDRL RILPLRWIGL GLLFAAATGM 900
  901 GAWFFGYPFL TSFFRYAEIP HIGKMPIASA LLFDFGVFLL VVGATVLVLI ALAHQSIRKH 960
  961 RVEKLAAAKE EN