YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGV_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.87
Transmembrane Helix	15	33	0.85
Non-Cytoplasmic	34	82	0.87
Transmembrane Helix	83	102	0.85
Cytoplasmic	103	113	0.77
Transmembrane Helix	114	135	0.91
Non-Cytoplasmic	136	150	0.75
Transmembrane Helix	151	178	0.73
Cytoplasmic	179	189	0.71
Transmembrane Helix	190	214	0.80
Non-Cytoplasmic	215	233	0.79
Transmembrane Helix	234	258	0.82
Cytoplasmic	259	326	0.84
Transmembrane Helix	327	347	0.89
Non-Cytoplasmic	348	380	0.86
Transmembrane Helix	381	402	0.90
Cytoplasmic	403	468	0.88
Transmembrane Helix	469	489	0.83
Non-Cytoplasmic	490	492	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLDPSQKE VLKFAVSCRI LTLVLQALFN IIIPDHHADA FSPPRLAPSG SVDQLVEALL  60
   61 GGLSRWDAEH FLFIAEHGYL YEHNFAFFPG FPLALLMGTE LLRPLQGLLS ERSCLLVSVA 120
  121 LLNSLFSVLA AVALHDLGCL VLHCPRQAFC AALLFCLSPA NVFLAAGYSE ALFAFLTFSA 180
  181 MGQLERGRGW ASGLLFALAA GVRSNGLVSV GFLLHSQCRG FCSSLVVLDP LKGLVKLMAS 240
  241 LCLSVLTVSL PFALFQYYAY TQFCFPGSAH AIPEPLLRLA SDRGYRLAGD YEPPWCSRAP 300
  301 PLIYSYIQDV YWNVGLLRYY ELRQVPNFLL ATPVTVLVVW ATWTYVTAHP WLCLTLGLQR 360
  361 TKDRESLEKP HPGFLSAKVF VYLVHAAALL AFGGLCMHVQ VLTRLLGSST PITYWFPAYL 420
  421 LQDREPLLRC VDTAPQKLLE NSPPGQKAPR NCVMKLLYNW KTCSPVTKCI LVYFLTYWLL 480
  481 GLIMHCNFLP WT