YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM9S4_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.95
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	279	0.99
Transmembrane Helix	280	303	0.89
Cytoplasmic	304	346	0.96
Transmembrane Helix	347	370	0.88
Non-Cytoplasmic	371	377	0.82
Transmembrane Helix	378	399	0.92
Cytoplasmic	400	414	0.87
Transmembrane Helix	415	437	0.91
Non-Cytoplasmic	438	448	0.76
Transmembrane Helix	449	470	0.91
Cytoplasmic	471	500	0.91
Transmembrane Helix	501	523	0.89
Non-Cytoplasmic	524	533	0.79
Transmembrane Helix	534	559	0.87
Cytoplasmic	560	567	0.91
Transmembrane Helix	568	590	0.91
Non-Cytoplasmic	591	608	0.85
Transmembrane Helix	609	631	0.89
Cytoplasmic	632	643	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAMIWWPR FLLLLCLTCK GSTFYVPGVA PINFHQNDPV EIKAVKLTSS RTQLPYEYYS  60
   61 LPFCQPNKIT YKAENLGEVL RGDRIVNTPF QVLMNSEKKC EVLCGQSNKP VILTVEQSRL 120
  121 VAERITEEYY VHLIADNLPV ATRLELYSSN RDSDDKKKEK DVQFEHGYRL GFTDVNKIYL 180
  181 HNHLSFILYY HREDTEEDQE HTYRVVRFEV IPQSIRLEDL KIDEKSSCTL PEGANSLPQE 240
  241 IDPTKENQLY FTYSVHWEES DIKWASRWDT YLTMSDVQIH WFSIINSVVV VFFLSGILSM 300
  301 IIIRTLRKDI ANYNKEDDIE DTMEESGWKL VHGDVFRPPQ YPMILSSLLG SGIQLFCMIL 360
  361 IVIFVAMLGM LSPSSRGALM TTACFLFMFM GVFGGFSAGR LYRTLKGHRW KKGAFCTATL 420
  421 YPGVVFGICF VLNCFIWGKH SSGAVPFPTM VALLCMWFGI SLPLVYLGYY FGFRKQPYDN 480
  481 PVRTNQIPRQ IPEQRWYMNR FVGILMAGIL PFGAMFIELF FIFSAIWENQ FYYLFGFLFL 540
  541 VFIILVVSCS QISIVMVYFQ LCAEDYRWWW RNFLVSGGSA FYVLVYAIFY FVNKLDIVEF 600
  601 IPSLLYFGYT TLMVLSFWLL TGTIGFYAAY MFVRKIYAAV KID