YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|139949132, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.98
Transmembrane Helix	57	80	0.89
Non-Cytoplasmic	81	118	0.96
Transmembrane Helix	119	140	0.92
Cytoplasmic	141	148	0.86
Transmembrane Helix	149	168	0.94
Non-Cytoplasmic	169	176	0.80
Transmembrane Helix	177	198	0.93
Cytoplasmic	199	208	0.77
Transmembrane Helix	209	228	0.93
Non-Cytoplasmic	229	237	0.68
Transmembrane Helix	238	258	0.92
Cytoplasmic	259	344	0.97
Transmembrane Helix	345	364	0.90
Non-Cytoplasmic	365	400	0.89
Transmembrane Helix	401	420	0.90
Cytoplasmic	421	464	0.97
Transmembrane Helix	465	487	0.90
Non-Cytoplasmic	488	495	0.77
Transmembrane Helix	496	519	0.84
Cytoplasmic	520	526	0.75
Transmembrane Helix	527	550	0.83
Non-Cytoplasmic	551	557	0.83
Transmembrane Helix	558	581	0.89
Cytoplasmic	582	607	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFGIGILGL RRSGVWKRRG DSVLLRVSTA AGGKFVGDRV SATMAPTLKQ AYRRRWWMAC  60
   61 TAVVENLFFS AVLLGWASLL IMLKKEGFYS SLCPAENRTN TTQDEQHQWT SCDQQEKMLN 120
  121 LGFTIGSFLL SATTLPLGIL MDRFGPRPLR LVGSACFAAS CTLMALASRD TEVLSPLIFL 180
  181 ALSLNGFAGI CLTFTSLTLP NMFGNLRSTF MALMIGSYAS SAITFPGIKL IYDAGVPFTV 240
  241 IMFTWSGLAC LIFLNCALNW PAEAFPAPEE VDYTKKIKLI GLALDHKVTG DRFYTHVTIV 300
  301 GQRLSQKSPS LEEGADAFIS SPDIPGTSEE TPEKSVPFRK SLCSPIFLWS LVTMGMTQLR 360
  361 VIFYMGAMNK ILEFIVTGGK ERETNEQRQK VEETVEFYSS IFGVMQLLCL LTCPLIGYIM 420
  421 DWRIKDCVDA PTEGTLNENA SFGDARDGAS TKFTRPRYRK VQKLTNAINA FTLTNILLVG 480
  481 FGIACLIKNL HLQLLAFVLH TIVRGFFHSA CGGLYAAVFP SNHFGTLTGL QSLISAVFAL 540
  541 LQQLLFMAMV GPLHGDPFWV NLGLLLLSFL GFLLPSYLYY YRSRLQREYA TNLVDPQKVL 600
  601 NTSKVAT