YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61806460, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.74
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	134	0.95
Transmembrane Helix	135	154	0.88
Cytoplasmic	155	164	0.78
Transmembrane Helix	165	183	0.89
Non-Cytoplasmic	184	208	0.88
Transmembrane Helix	209	234	0.73
Cytoplasmic	235	243	0.79
Transmembrane Helix	244	265	0.95
Non-Cytoplasmic	266	285	0.91
Transmembrane Helix	286	310	0.87
Cytoplasmic	311	354	0.98
Transmembrane Helix	355	375	0.89
Non-Cytoplasmic	376	391	0.79
Transmembrane Helix	392	410	0.89
Cytoplasmic	411	479	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRQAARETF LILFLIISLM WPIHSEISNC VIKREEERCL ERIALHDPKD DQKFECPWEW  60
   61 DNLTCWQAAS VGDVVEVNCP ELFEFMSPEE GLGKISRNCT EFGWSEPYPH YVDACMTDEN 120
  121 TTKPDMYYAS VKALYTVGYS TSLVSLTTAM VILCRFRKLH CTRNFIHMNL FVSFILRAIS 180
  181 VFIKDGVLYA EEDSDHCFVH TVGCKAVMVF FHYCVMSNYF WLFIEGLYLF TLLVETFFPE 240
  241 RRYFYWYTII GWGTPTICVT IWAVLRLHFD DSGCWDMNDN TALWWVIKGP VVASIMINFV 300
  301 LFIGIIIILV QKLQSPDIGG NESSIYLSCA QKCFSEPTQA VQHSCRMSEL STITLRLARS 360
  361 TLLLIPLFGI HYTVFAFSPE DFSKRERLVF ELGLGSFQGF VVAVLYCFLN GEAQSEIKRK 420
  421 WRSWTVNRYF AVDLKQQRHP SLASSGVNGG TQLSILSKSS SQIRMSSPLA ETVNLNLPT