YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DOLK_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.73
Transmembrane Helix	16	39	0.82
Non-Cytoplasmic	40	74	0.66
Transmembrane Helix	75	95	0.86
Cytoplasmic	96	109	0.65
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	135	0.56
Transmembrane Helix	136	155	0.85
Cytoplasmic	156	164	0.54
Transmembrane Helix	165	186	0.81
Non-Cytoplasmic	187	224	0.50
Transmembrane Helix	225	247	0.94
Cytoplasmic	248	256	0.62
Transmembrane Helix	257	278	0.93
Non-Cytoplasmic	279	297	0.68
Transmembrane Helix	298	318	0.92
Cytoplasmic	319	337	0.65
Transmembrane Helix	338	354	0.69
Non-Cytoplasmic	355	358	0.81
Transmembrane Helix	359	379	0.94
Cytoplasmic	380	401	0.90
Transmembrane Helix	402	422	0.92
Non-Cytoplasmic	423	437	0.87
Transmembrane Helix	438	460	0.88
Cytoplasmic	461	474	0.82
Transmembrane Helix	475	493	0.92
Non-Cytoplasmic	494	502	0.66
Transmembrane Helix	503	523	0.65
Cytoplasmic	524	538	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRECAPPTP GSGAPLSGSV LAEAAVVFVV VLSIHAAVWD RYSWCAVALA VQAFYVQYKW  60
   61 DRLLQQGSAV FQFRMSANSG LLPASVVMPL LGLVMKERCQ AAGNPYFERF GIVVAATGMA 120
  121 VALFSSVLAL GITRPVPTNT CVISGLAGGV IIYIMKHSLS VGEVIEVLEA LLIFVYLNMI 180
  181 LLYLLPRCFT PGEALLVLGG ISFMLNQLIK RSLTVVESQG DPLDFFLLVV VVGMVLMGIF 240
  241 FSTLFVFMDS GTWASSIFFH LMTCVLGLGV VLPWLHRLIR RNPLLWLFQF LFQTETRVYL 300
  301 LAYWCLLATV ACLVVLYQNA KRSSSESKKH QAPTITRKYF HFIVVATYIP GIILDRPLLY 360
  361 VAATVCLAVF IFLEYVRYFR IKPLGHTLRS LLSLFLDERD SGPLILTHIY LLLGMSLPIW 420
  421 LVPRPCTQKG SLGGARALVP YAGVLAVGVG DTVASIFGST MGEIRWPGTK KTFEGTMTSI 480
  481 FAQIISVALI LIFDSGVDLN YSYAWILGSI STVSLLEAYT TQIDNLLLPL YLLILLMA