YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57636249, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	37	0.93
Non-Cytoplasmic	38	45	0.71
Transmembrane Helix	46	66	0.89
Cytoplasmic	67	85	0.81
Transmembrane Helix	86	105	0.94
Non-Cytoplasmic	106	150	0.84
Transmembrane Helix	151	169	0.84
Cytoplasmic	170	177	0.76
Transmembrane Helix	178	199	0.92
Non-Cytoplasmic	200	210	0.90
Transmembrane Helix	211	231	0.89
Cytoplasmic	232	240	0.86
Transmembrane Helix	241	260	0.96
Non-Cytoplasmic	261	270	0.79
Transmembrane Helix	271	293	0.88
Cytoplasmic	294	309	0.89
Transmembrane Helix	310	329	0.85
Non-Cytoplasmic	330	334	0.80
Transmembrane Helix	335	356	0.91
Cytoplasmic	357	377	0.92
Transmembrane Helix	378	399	0.92
Non-Cytoplasmic	400	602	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNENNYRRLN KTYKPHYLPG LDGLRAIAVI GIIIYHLNTK WLSGGFLGVD TFFVISGYLI  60
   61 TSLLLSEYYR NNSINLVNFW LRRFKRLIPA MMFVVTVVLI YTLLFKPELI ISIKHDAIAA 120
  121 LFYVSNWWYI IQDVDYFNQF AVAPLKHLWS LAIEEQFYLF FPFILLGLLK FFKKRTTMII 180
  181 LLIISLLSLT AMITIHMYTG NNSRVYFGTD TRLQTLLLGC LLAFIWPPFS FRKDISKGAK 240
  241 ASISAIGIVG MAVLIYLFVV VSDQDKWIYS GGFYAISFLT LFVIASVVHP SSVLKKILSF 300
  301 KLFIYIGKRS YSLYLWHYPI IIFMNSYFVQ GQIPWFVYIC EVILMFVMAE VSYKFIETPI 360
  361 RKNGFKAFTV IPKNLTRFSR TIIVLILLVP SAFIVFGAYD SLGKEHDKQQ AAKQKSFKTN 420
  421 QKAKPKKPDE NNQDKSSQQH FNPKEASPLL LGDSVMVDIG QVFSEKVPNA NIDGKVGRQL 480
  481 IEGKDLINQK YQDYTKKGQS VVIELGTNGE FTKDQMNELI DSLGEADIYL IKVRVPRDYE 540
  541 STNNKIMEQV AKKHKNVHIV DWYKTSEGHS EYFAYDGIHL EYSGVKALSN EIIKKMKEVN 600
  601 EK