YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61658317
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.81
Transmembrane Helix	31	52	0.79
Cytoplasmic	53	60	0.59
Transmembrane Helix	61	81	0.83
Non-Cytoplasmic	82	99	0.90
Transmembrane Helix	100	120	0.95
Cytoplasmic	121	132	0.80
Transmembrane Helix	133	151	0.94
Non-Cytoplasmic	152	173	0.85
Transmembrane Helix	174	193	0.91
Cytoplasmic	194	204	0.82
Transmembrane Helix	205	231	0.80
Non-Cytoplasmic	232	237	0.81
Transmembrane Helix	238	260	0.83
Cytoplasmic	261	275	0.87
Transmembrane Helix	276	295	0.94
Non-Cytoplasmic	296	326	0.59
Transmembrane Helix	327	347	0.52
Cytoplasmic	348	355	0.51
Transmembrane Helix	356	381	0.84
Non-Cytoplasmic	382	417	0.62
Transmembrane Helix	418	438	0.79
Cytoplasmic	439	780	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTTYIGDC RISFFNISSQ GFWDNLKSPD VVFGYSLPLL EIQIILIFFC IVMSHMFLRC  60
   61 IGISQIASYM IAGIVLGPQL FDVLEKSSGK LSVDPALDGI AALRCISVFG TLMFTFLMTV 120
  121 RTSRRVAFHS GKLPVVIGIV SFFAPLFGLG FQNFFSDNID PHYMPLTKAL GERTAIVITQ 180
  181 SSILLPSTTY ILLELKIINS ELGRLALSAC VINDILGIFS MIVASIQATY IHVSHATAYR 240
  241 DTVAVIIFFL VVFLVFKPMV QWVIDRTPED KPVEDMYIHA VIITALASAA YFVFFNMKYI 300
  301 LGPLMIGIII PEGPPLGSAL EAKFERLTMN VFLPISITFS AMRCDGARIL SQFNDIFFNI 360
  361 FLTFLILVIK LVACLAPCLY YKLPLSESLA VSFILSYKSF ADFVLYEAVL DDTYISQATY 420
  421 SFLILYSLLN AGIVPTVLRR MYDPRRKYVN YQKRDILHLE RNSDLRILTC LHKPENVSET 480
  481 IAFLQLLSSP NLDFPIAVTV LHLVKLVGQI NPIIVSHDKK LKRLNKDSYI HTANLAFRQF 540
  541 VLESLESVTV TTFTAFSHEN LMHEDICTLA LDKTTSMIVV PSGRKWTVDG LFESDNTAIR 600
  601 HLNQSLLDRA PCSIGILVDR GQFSRKSIVT SKKRYIIDVG VLFIGGKDDR EALSLVKRMK 660
  661 NNPRIRVTVI RLVFDHEIES DWDYILDNEG LKDLKSTEDN KDIDYIERIV TSSVEVVKAV 720
  721 QLLAEEYDLM VVGRDHDMTS QDLSGLMEWV ELPELGVIGD LLAARDLSSK VSVLVVQQQQ 780
  781